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This Smoked Butternut Squash Mac and Cheese is fall comfort food with a smoky backyard twist. Butternut squash is smoked until tender, then blended into a creamy cheese sauce with sharp cheddar and Parmesan. Add a little smoky chicken, crispy bacon, and plenty of pasta, and you’ve got one seriously satisfying mac and cheese.
It’s rich, creamy, smoky, cheesy, and just a little bit sweet from the squash.

Anything cooked inside, in the oven or on the stovetop, can be cooked outside on the smoker, and that includes a great Mac and Cheese recipe!
The squash picks up a subtle smoky flavor before it’s blended into the sauce, so you’re not getting chunks of squash throughout the pasta. Instead, it becomes part of the creamy, cheesy, velvety base. Then we add smoked chicken and bacon for even more smoky flavor and texture.
It’s a great fall side dish for a backyard dinner, but honestly, with the chicken and bacon, it can easily be dinner all on its own.
Table of Contents
Why You’ll Love This Smoked Butternut Squash Mac and Cheese
- It’s creamy without relying on a heavy cream sauce. The smoked butternut squash becomes part of the sauce and adds incredible texture.
- The squash adds subtle sweetness. It balances the sharp cheeses and smoky meats.
- You get smoke in every bite. The squash, chicken, and bacon all bring their own uniquely smoky flavor.
- It’s a great make-ahead recipe. You can smoke the squash, chicken, and bacon ahead of time, then assemble the mac and cheese when you’re ready.
- It works as a side or main dish. Leave out the chicken for a hearty side, or keep it in for a complete meal.
- It’s perfect for fall. This is exactly the kind of cozy, over-the-top comfort food I want when the weather cools down.
Ingredients
There are a few components to this recipe, but you can knock them out at the same time on the smoker.
For the Smoked Squash and Meats
- Butternut squash: One medium squash, peeled, seeded, and cut into cubes.
- Chicken breasts: Smoked alongside the squash and then shredded or diced. For a shortcut, you can also use pre-cooked chicken or a rotisserie chicken.
- Thick-cut bacon: Smoked until crisp and then chopped.
- Olive oil: Helps the seasoning stick to the squash and chicken.
- Seasoning: Use your favorite easy rub or SPG rub for the squash (or simply Kosher salt and pepper) and your favorite BBQ rub or chicken seasoning for the chicken. You can also use the same seasoning for both. Seriously, keep it simple!
For the Mac and Cheese
- Macaroni: A 12-ounce box of your favorite macaroni or other noodles works well.
- Yellow onion and garlic: Build the savory base for the sauce.
- Whole milk and chicken stock: Loosen the squash puree and create a creamy sauce.
- Sharp cheddar: Adds the classic mac and cheese flavor.
- Parmesan: Adds saltiness and depth.
- Nutmeg: Just a small amount adds warmth without making the sauce taste sweet.
- Kosher salt and black pepper: Season the sauce to taste.
See the recipe card below for exact quantities.
Preparation
Prepare the Butternut Squash
- Slice off both ends of the squash, then cut it in half and remove the seeds and pulp.
- Peel the squash with a sharp vegetable peeler, then cut it into evenly sized cubes.
- Toss the cubed squash with olive oil and seasoning, then place on a sheet pan.
- Tip: Remove the seeds before peeling. It’s much easier to scoop out the seeds while the skin is still on.
Prepare the Chicken and Bacon
- Coat the chicken with olive oil and your favorite chicken seasoning.
- The bacon doesn’t need any additional seasoning.
You can smoke all three (squash, chicken, and bacon) at the same time, which makes this recipe much more efficient.
How to Smoke Butternut Squash

- Prepare smoker and target 250 degrees Fahrenheit using fruit wood (like apple or cherry) for a sweeter and softer flavor. If you want a more pronounced smoke flavor use oak or hickory.
- Place the sheet tray of seasoned squash right onto the smoker. This is also a good time to add the chicken and bacon directly to the smoker.
- Butternut squash: Smoke for about 2 hours, or until tender.
- Chicken: Start checking after about 1 hour and remove when the internal temperature reaches 160°F, allowing for carryover cooking.
- Bacon: Remove when crisp, generally around 90 minutes to 2 hours.
Once everything is done, shred or dice the chicken and chop the bacon.
Make-ahead option: You can smoke the squash, chicken, and bacon a day ahead and refrigerate them until you’re ready to make the mac and cheese.
How to Make Smoked Butternut Squash Mac and Cheese
Start with the base, then blend it for texture, and then combine the ingredients.
- Cook the pasta: Bring a large pot of salted water to a boil. Cook the macaroni according to the package directions, then drain and set aside.
- Sauté the aromatics: Heat olive oil in a large 10-inch cast iron skillet or deep sauté pan over medium heat. Add the diced onion and cook until softened, about 10 minutes. Add the garlic and cook for another minute.
- Add the squash: Add the smoked butternut squash and stir for 1–2 minutes to warm it through and combine it with the onion and garlic.
- Blend the sauce: Transfer the squash mixture to a high-powered blender. Add the milk, chicken stock, salt, pepper, and nutmeg. Blend until completely smooth. If the mixture is too thick, add a little more milk or chicken stock until you reach a smooth, pourable consistency.
- Add the cheese: Pour the squash puree back into the skillet over low heat. Add the cheddar and Parmesan and stir until the cheese is melted and the sauce is smooth.
- Add the pasta and meats: Stir in the cooked macaroni, chicken, and half of the chopped bacon. Continue stirring until everything is evenly coated and warmed through.
- Finish: Taste and adjust the salt and pepper as needed. Top with the remaining bacon and serve warm.

Expert Tip
Smoke the squash, chicken, and bacon at the same time.
This is the easiest way to make the recipe more manageable. The ingredients have slightly different cooking times, so start checking the chicken and bacon before the squash is finished, but you can get all three components going together.
And if you’re making this for a holiday or dinner party, smoke everything the day before. Then the mac and cheese comes together much more quickly when you’re ready to serve it.
Absolutely. You can roast the butternut squash in the oven at 400°F until tender, about 30–40 minutes. The chicken and bacon can also be cooked separately in the oven or on the grill.
You won’t get quite as much smoky flavor, but you’ll still have a creamy and delicious butternut squash mac and cheese.
Yes. Simply leave it out. The bacon and smoked squash still give the mac and cheese plenty of flavor.
If you want to make it completely vegetarian, leave out both the chicken and bacon and use vegetable stock instead of chicken stock. No need to adjust any of the other ingredients!
Yes. The bacon adds smoky, salty flavor and a little crunch, but the recipe is still delicious without it.
For a vegetarian version, omit the bacon and chicken and substitute vegetable stock for chicken stock.
Absolutely. Pre-cut squash is a great shortcut if you want to save time. Just make sure the cubes are roughly the same size so they smoke evenly.
Yes. The smoked squash, chicken, and bacon can all be prepared a day ahead.
You can also assemble the finished mac and cheese ahead of time and gently reheat it before serving. If the sauce thickens too much, add a splash of milk or chicken stock while reheating.
Yup! Shells, cavatappi, elbows, or any short pasta that holds onto sauce will work well.
What to Serve With Smoked Butternut Squash Mac and Cheese
This is rich enough to be the star of the meal, but it’s also an excellent side dish for a fall BBQ.
Serve it alongside:
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- Smoked Turkey (for a great holiday side dish)
- Smoked Pork Shoulder
- Smoked Chicken
- Smoked Beef Short Ribs
- Grilled Pork Chops
- Roasted or grilled fall vegetables
For a fall dinner, I’d keep the rest of the meal simple. This mac and cheese is already bringing plenty of richness and flavor to the table.
Tools Used
- Smoker
- Foil-lined sheet pan
- 10-inch cast iron skillet or deep sauté pan
- High-powered blender
- Large pot for pasta
- Instant-read thermometer
- Sharp knife
- Vegetable peeler
About Vindulge
Mary (a certified sommelier and recipe developer) and Sean (backyard pitmaster) are co-authors of the critically acclaimed cookbooks — Fire + Wine and Fire + Wine Backyard Pizza — and have been creating content for the IACP-nominated website Vindulge since 2009. They live in Oregon on a farm just outside Portland.

Smoked Butternut Squash Mac and Cheese Recipe
Equipment
- Strong Blender
- Sheet Tray
Ingredients
For the Smoked Butternut Squash and Meats
- 1 butternut squash, peeled, seeded, and cut into cubes, (After smoking it is roughly 15 ounces of smoked squash by weight. If yours is larger, just adjust the liquid for the mac and cheese.)
- 2 smoked chicken breasts, (When chicken is cooked, shred with a fork, or cut into small cubes.)
- 6 slices slices thick-cut bacon
- 2 tablespoons extra virgin olive oil,
- 1 tablespoon beef rub
- 1 tablespoon chicken seasoning, (Or you can use the same rub as the squash)
For the Mac and Cheese
- 12 ounces macaroni, cooked to package directions
- 1 tablespoon extra virgin olive oil
- 1 cup diced yellow onions, (about one medium yellow onion)
- 2 cloves garlic, minced
- 1 cup whole milk
- 1 cup chicken stock, (we use low sodium)
- ½ teaspoon kosher salt
- ½ teaspoon coarse black pepper
- ¼ teaspoon ground nutmeg
- 1 ½ cups shredded sharp cheddar cheese
- 1 cup freshly grated Parmesan cheese, (you can also substitute a sharper hard cheese like Asiago)
Instructions
- Prepare the smoker: Preheat the smoker to 250°F. For a softer smoke flavor, use apple or cherry wood. For a stronger smoke flavor, use oak or hickory.
- Season: Place the cubed butternut squash on a foil-lined sheet pan and toss with 1 tablespoon olive oil and the beef rub. Coat the chicken with the remaining olive oil and BBQ rub. Leave the bacon unseasoned.
- Smoke: Place the squash, chicken, and bacon on the smoker. Smoke the squash for about 2 hours. Begin checking the chicken after 1 hour and remove it when it reaches 160°F. Remove the bacon when crisp and the squash when tender.
- Prepare the meats: Shred or dice the chicken and chop the bacon into small pieces.
- Cook the pasta: Bring a large pot of salted water to a boil. Cook the macaroni according to the package directions. Drain and set aside.
- Sauté: In a large 10-inch cast iron skillet or deep sauté pan, heat 1 tablespoon olive oil over medium heat. Add the onion and sauté until softened, about 10 minutes. Add the garlic and cook for another minute.
- Add the squash: Stir the smoked squash into the onions and garlic and warm for 1–2 minutes.
- Blend: Transfer the squash mixture to a high-powered blender. Add the milk, chicken stock, salt, pepper, and nutmeg. Blend until smooth. If needed, add a little more milk or stock to thin the puree.
- Make the cheese sauce: Pour the squash puree back into the skillet over low heat. Add the cheddar and Parmesan and stir until melted and smooth.
- Add the pasta and chicken: Stir in the cooked macaroni, smoked chicken, and half of the chopped bacon. Continue stirring until everything is hot and evenly coated.
- Finish: Taste and adjust seasoning as needed. Top with the remaining bacon and serve warm.
Notes
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.


























Comfort at its finest! Smoked flavors and using cast iron is key! Adds so much more flavor. This is our favorite recipe by vindulge! Thanks guys
So glad you like it! It’s one of our favorite fall recipes 🙂
THIS….WAS….HEAVENLY!! Just tried this recipe and found that I WILL be doing it again, very soon! I wanted to eat the squash all by itself (after smoking), but had to restrain myself to complete the full recipe. And I wasn’t disappointed, in the least. Now I have to try this without the bacon (my father cannot eat beef or pork).